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dev-setup

General & other

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Updated 10-15 21:53

About this skill

Developer Setup

Prerequisites

  • Linux: supported Debian/Ubuntu or dnf-based host, x86_64/arm64, sudo/root for initial packages, and /dev/kvm plus /dev/vhost-vsock for VM execution and guest communication
  • macOS 13+ (Ventura or later) -- required for Virtualization.framework
  • Apple Silicon (arm64) -- primary macOS target. Intel Macs are not supported for VM features.
  • Docker (native on Linux, Colima on macOS) -- needed for just _build-assets (kernel + rootfs builds)
  • Tart + sshpass (macOS) -- needed for the clean-macOS package install owned by just test

Required tools

Run just doctor to check all of these:

Tool Purpose Install
Rust (stable) Host + guest binaries rustup
just Task runner cargo install just
pnpm Frontend package manager npm i -g pnpm
Node.js 24+ Frontend build nvm or brew install node
uv Python package manager curl -LsSf https://astral.sh/uv/install.sh | sh
Docker (via Colima on macOS) VM image builds brew install colima docker (macOS) or sudo apt install docker.io (Linux)
Docker BuildKit (buildx) Cross-arch container builds brew install docker-buildx (macOS); bootstrap selects docker-buildx from Ubuntu/Debian archives or the discovered docker-buildx-plugin fallback
Bubblewrap (Linux) Kernel-enforced loopback-only host gate sudo apt install bubblewrap (bootstrap-owned)
cpio Initrd unpack/repack system on macOS; sudo apt install cpio or sudo dnf install cpio on Linux (bootstrap-owned)
Tart + sshpass (macOS) Disposable clean-Mac package install gate brew trust --formula cirruslabs/cli/softnet && brew install cirruslabs/cli/tart cirruslabs/cli/sshpass

Rust targets (auto-installed by just doctor fix):

  • aarch64-unknown-linux-musl -- guest binaries (arm64)
  • x86_64-unknown-linux-musl -- guest binaries (x86_64)

Cargo tools (auto-installed by just doctor fix):

  • cargo-nextest -- native Rust test runner
  • cargo-llvm-cov -- coverage
  • cargo-audit -- vulnerability scanner
  • cargo-tauri -- Tauri CLI
  • cargo-sbom -- Rust SBOM generation
  • b3sum -- BLAKE3 checksums

Container runtime setup

On macOS, Docker runs inside a Colima VM. The default memory allocation may be too small -- the rootfs build runs apt installs, npm installs, and curl-based CLI installers concurrently, which can OOM-kill the build (exit code 137).

Minimum: 12GB RAM. Recommended: 16GB RAM, 8 CPUs (Tauri's GTK/webkit2gtk dep chain pushes the install-test build past 8GB on cold caches; 12GB is the floor that doesn't OOM).

Colima (macOS)

# First-time setup
brew install colima docker
colima start --vm-type vz --vz-rosetta --memory 16 --cpu 8

# Restart with new resources
colima stop
colima start --vm-type vz --vz-rosetta --memory 16 --cpu 8

# Verify
docker info | grep -E 'Total Memory|CPUs'

Colima recovery discipline

If Docker-dependent recipes fail on macOS, do not report Docker/Colima as unavailable until you have checked for the common half-running Colima state. The signature is:

  • colima list says the profile is Running
  • docker version / docker info cannot connect to ~/.colima/default/docker.sock
  • colima ssh -- docker ps fails with kex_exchange_identification, Connection reset by peer, or colima status reports error retrieving current runtime: empty value

First recovery attempt:

colima stop
colima start
docker version

If the profile needs its expected resources restored, start with the explicit Capsem defaults instead:

colima stop
colima start --vm-type vz --vz-rosetta --memory 16 --cpu 8
docker version

Only after that restart fails should you treat Colima as a real environment blocker. Record the exact failed command and the Docker/Colima output.

Linux

Docker runs natively on Linux -- no Colima or memory tuning needed. Canonical bootstrap installs the native build libraries, Docker/Buildx, and Bubblewrap; installs the distro's QEMU user/binfmt package and proves the fix-binary registration Docker needs for the other architecture; enables the daemon; loads KVM and vhost-vsock; and provisions both device nodes for repeated VM lifecycles in the current shell. KVM uses the same durable mode as Linux release CI because systemd-logind can remove a named ACL after the first VM exits. vhost-vsock remains group-owned with a narrow current-user ACL. Do not hand-provision binfmt or either device, and do not weaken the separate macOS VZ/Seatbelt path; rerun the checked-in bootstrap so distro registration and udev rules remain the authority.

./bootstrap.sh --yes

just doctor checks these resources automatically and fails if below minimum. On Linux bootstrap and hosted CI run the checked-in Bubblewrap proof: only lo, usable loopback/devices, and no direct egress. An ephemeral GitHub Ubuntu runner may lift only the exact AppArmor user-namespace switch responsible for RTM_NEWADDR, after which the complete proof must pass again. Local bootstrap never applies that hosted repair. When doctor is already inside a gate, it verifies that only lo is visible instead of attempting a nested namespace.

First-time setup

# 1. Clone and enter
git clone <repo> && cd capsem

# 2. Bootstrap (interactive: prompts [Y/n] before each install; --yes for CI)
./bootstrap.sh
#   ./bootstrap.sh --yes    # non-interactive

# 3. Boot the VM to verify everything works
just exec "echo hello from capsem"

bootstrap.sh is the deliberately public repo-root bootstrap entrypoint. It runs just _build-assets as part of doctor's auto-fix, so step 3 just confirms the VM boots.

What bootstrap installs

Three phases. Default at every prompt is Yes (Enter accepts; type n to decline). --yes and non-tty input both auto-accept.

Phase Tool Channel
1 (hard prereqs) bash, git, curl system package manager (you install)
1 rustup (stable, minimal profile) sh.rustup.rs
1 just just.systems -> ~/.local/bin
2 uv astral.sh/uv -> ~/.local/bin
2 Python lock metadata + deps uv lock --project build_system --locked then uv sync --project build_system --frozen
2 Rust workspace deps cargo fetch --locked before sandboxed qualification
2 (Linux) native compiler/Tauri libs, cpio, Docker/Buildx, Bubblewrap apt or dnf
2 (Linux) configured Node major + pnpm 10 SHA256-verified official Node archive + npm
2 (Linux) Docker/KVM/vhost-vsock current-session access groups + checked-in udev policy and narrow socket/vhost ACL
2 (macOS) flock, pnpm brew
2 (macOS) tart, sshpass brew
2 (macOS) colima, docker, docker-buildx brew (+ symlink into ~/.docker/cli-plugins)
2 (macOS) Colima VM colima start --vm-type vz --vz-rosetta --memory 16 --cpu 8
2 Frontend, docs, site, and release-site deps config-driven capsem-gate install-node with frozen lockfiles
3 Doctor --fix build_system/scripts/doctor/doctor-common.sh --fix -- Rust targets, exact config-owned Cargo tools (cargo-nextest, cargo-llvm-cov, cargo-audit, b3sum, cargo-tauri, cargo-sbom), build VM assets, pack initrd

The VM asset rail materializes its digest-pinned OBOM tools inside its own architecture-matched helper; do not install a parallel global cdxgen.

Kernel version

Kernel selection is part of the profile-derived image build, not a standalone developer setting. The build backend reads the exact kernel release and SHA-256 from the checked-in build contract, then verifies the source archive before extraction while building profile assets through capsem-admin/just. Do not add a parallel kernel setting or a mutable latest-release lookup.

Or step by step:

just doctor          # Check tools (colored output, structured recap)
just doctor fix      # Auto-fix missing targets, cargo tools, config files
just _build-assets    # Build kernel + rootfs (~10 min)
just exec "echo hi"   # Verify VM boots

If step 4 prints "hello from capsem" and exits cleanly, you're set.

Daily workflow

just shell            # Build + boot VM interactively (~10s)
just exec "CMD"        # Build + boot + run command + exit
just fast-test        # Incomplete source feedback before expensive work
just focus-test functional # Rerun one affected functional owner
just test             # Optional reusable whole-system proof when warranted
just dev ui               # Frontend dev server (mock mode, no VM)
just dev              # Full Tauri app with hot-reload

See /dev-just for the complete recipe reference.

Credentials

Do not create ~/.capsem/user.toml. Credentials are captured and replayed by the credential broker plugin through profile/corp policy. Hermetic tests use the local mock server and Ironbank fixtures; real OAuth/API-key manual runs are debug evidence, not release proof.

Do not add setup-time admin or guest config roots. Runtime behavior is profile/corp-owned; settings are UI/application preferences only. Generated settings UI metadata may render controls, but it is not a product config authority.

Claude Code permissions

To avoid repeated permission prompts when using just and capsem commands, add these to your Claude Code settings. Run /update-config or edit .claude/settings.local.json:

{
  "permissions": {
    "allow": [
      "Bash(just *)",
      "Bash(uv run --project build_system --frozen *)",
      "Bash(cargo *)",
      "Bash(pnpm *)",
      "Bash(cd web/app && pnpm *)",
      "Bash(npx *)",
      "Bash(python3 build_system/scripts/*)",
      "Bash(rustup *)"
    ]
  }
}

This allows:

  • just * -- all recipes (run, test, build-assets, query-session, list-sessions, doctor, etc.)
  • uv run --project build_system --frozen * -- capsem-builder CLI and Python scripts
  • cargo * -- Rust builds, tests, checks
  • pnpm * -- frontend package management and builds
  • npx * -- skills CLI and other npx tools
  • python3 build_system/scripts/* -- project build and diagnostic boundaries
  • rustup * -- cache/target/component management

Codesigning

The app binary must be codesigned with com.apple.security.virtualization entitlement or Virtualization.framework calls crash. The justfile handles this automatically via _sign recipe.

Prerequisites (macOS only):

  • Xcode Command Line Tools: xcode-select --install
  • build_system/packaging/macos/entitlements.plist must exist (checked into git)

Verification: just doctor includes a signing test that compiles a tiny binary, signs it with the entitlements, and verifies the operation succeeds. Run just doctor after initial setup to confirm signing works.

Linux developers: codesign is not available and not needed on Linux. VM features use the KVM backend when /dev/kvm and /dev/vhost-vsock are available. Use just test for the same artifact-recording performance suite as macOS.

Troubleshooting

just exec fails with codesign error

  • Run just doctor -- it will diagnose the specific signing issue
  • Ensure Xcode CLTools are installed: xcode-select --install
  • Check entitlements file exists: cat build_system/packaging/macos/entitlements.plist
  • Try manual sign: codesign --sign - --entitlements build_system/packaging/macos/entitlements.plist --force cache/target/cargo/debug/capsem
  • Check SIP status: csrutil status

just doctor fails

Run just doctor fix to auto-fix all fixable issues. Fixes run in dependency order (rustup targets before cargo tools before build-assets before pack-initrd). Non-fixable issues show install hints.

just _build-assets or just _gate-install fails with exit code 137 (or 143 mid-cargo-build)

The container runtime VM ran out of memory. Bump Colima to at least 12GB (16GB recommended):

  • Colima: colima stop && colima start --vm-type vz --vz-rosetta --memory 16 --cpu 8
  • Linux: Docker runs natively, no memory tuning needed

just _build-assets fails with "Release file not valid yet"

The container VM's clock has drifted. The builder uses Acquire::Check-Valid-Until=false to work around this, but if you see this error on an old builder version:

  • Colima: colima stop && colima start --vm-type vz --vz-rosetta --memory 16 --cpu 8 (resets clock)
  • Docker Desktop: restart Docker Desktop

just _build-assets fails (other)

  • Check Docker is running: docker info
  • Check the profile contract is valid: capsem-admin profile check config/profiles/code/profile.toml --config-root config
  • On first run, Docker image pulls can be slow

just exec fails with "assets not found"

Run just _build-assets first. Assets are gitignored and must be built locally.

cargo run or cargo test crashes with signing error

  • .cargo/config.toml must exist and be tracked in git -- it configures the custom runner (build_system/packaging/macos/run_signed.sh) that signs binaries with Virtualization.framework entitlements before execution
  • If missing: git checkout .cargo/config.toml
  • The justfile _sign recipe signs separately, so just exec works even without the cargo runner -- but direct cargo run/cargo test and IDE integrations will crash
  • Lesson: bare .gitignore patterns (no / prefix) match at any depth. Always anchor with / when you mean root-only (e.g., /config.toml not config.toml), or you risk silently ignoring files in subdirectories like .cargo/

Cross-compile errors

  • Check .cargo/config.toml has linker config for musl targets
  • Run rustup target add aarch64-unknown-linux-musl x86_64-unknown-linux-musl
  • Platform-specific type issues: use as _ for libc calls (see /dev-rust-patterns)

Disk full / Colima eating all disk space

Docker builds accumulate images, BuildKit data, and stopped containers inside the Colima VM. Inspect and reclaim them through the typed cache controller so active images, foreign resources, retention pins, and every applied deletion remain visible in one inventory and journal:

just cache stats
just cache prune docker # exact preview; no mutation
just cache prune docker --apply --reason "Colima cache recovery"

Do not bypass this with broad docker system/image/builder prune commands: they cannot distinguish active Capsem reuse from disposable state and leave no controller journal. The runtime adapter runs the configured host-side trim after an applied Colima reclamation. just cache stats reports repository and native-runtime state together; use --offline when Docker or Tart is intentionally unavailable.

Read /dev-cache before changing cache ownership, limits, or cleanup behavior.

Docker credential helper error (docker-credential-osxkeychain not found)

When Colima is installed standalone (without Docker Desktop), ~/.docker/config.json may reference a credential helper that doesn't exist. The symptom is docker run failing to pull images with exec: "docker-credential-osxkeychain": executable file not found.

Fix: set credsStore to empty string in ~/.docker/config.json:

{ "credsStore": "" }

just doctor checks for this under "Container Runtime" and will flag the mismatch.

VM boot hangs

  • Check codesigning: codesign -dvv cache/target/cargo/debug/capsem 2>&1 | grep entitlements
  • Check assets exist: ls cache/target/assets/arm64/vmlinuz cache/target/assets/arm64/rootfs.erofs
  • Check kernel architecture matches host: wrong-arch kernel causes silent hang. VmConfig::build() now rejects mismatched kernels at config time.
  • Try with debug logs: RUST_LOG=capsem=debug just exec

Doctor architecture

The doctor system is three bash scripts:

build_system/scripts/doctor/
  doctor-common.sh    # Entry point, cross-platform checks, fix registry, recap
  doctor-macos.sh     # macOS: Tart, Colima, Rosetta, codesigning, brew hints
  doctor-linux.sh     # Linux: KVM, apt/dnf hints

just doctor calls doctor-common.sh. just doctor fix calls doctor-common.sh --fix.

Fix registry

All fixable issues use an ordered fix registry defined at the top of doctor-common.sh. Each entry has an ID, command, and description. Checks call fixable <id> <label> to mark a fix as needed. Fixes run in registry order (dependency order), deduped by design.

Registry order (each depends on the ones above it):

  1. rustup-targets -- cross-compile targets
  2. llvm-tools -- rust-lld linker
  3. cargo-nextest, cargo-llvm-cov, cargo-audit, b3sum, cargo-tauri, cargo-sbom -- exact config-owned Cargo tools
  4. entitlements, cargo-config, run-signed -- git checkout config files
  5. pnpm-install -- every locked Node workspace, through capsem-gate install-node
  6. build-assets -- VM kernel + rootfs (needs docker)
  7. pack-initrd -- guest binaries (needs assets)

Design rules

  • Fixable checks use fixable <id> <label>, not raw fail(). This registers the fix in the ordered registry.
  • Non-fixable checks use fail() with an install hint. System tools (node, docker, etc.) can't be auto-installed safely.
  • Platform-specific checks live in doctor-macos.sh / doctor-linux.sh. Each defines check_platform() and tool_hint().
  • Test, don't just check. The codesigning section compiles and signs a test binary. docker buildx version tests functionality, not just file existence.
  • Recover Colima before declaring Docker dead. On macOS, a stale Colima VM can leave the Docker socket present but unusable. Use the Colima recovery discipline above before filing or reporting a Docker/Colima blocker.
  • Bootstrap calls doctor. bootstrap.sh checks bare minimums (bash, git, curl), provisions the complete platform host (including Linux Docker/KVM/Bubblewrap and configured Node), installs Rust/Python/frontend tools, then runs doctor-common.sh --fix.