scrna-cell-type-annotator
Auto-annotate cell clusters from single-cell RNA data using marker genes.
Skills
Find an Agent Skill for your task. Read the guide and copy the install command.
Updated 11-05 00:16
Data & analytics
17,418 results
sds-msds-risk-scanner
Extract hazard codes and safety info from chemical safety datasheets.
singlecell-portal
Programmatically query public single-cell study metadata from the Broad Institute Single Cell Portal REST API when you need to search and filter datasets by…
smiles-de-salter
Analyze data with `smiles-de-salter` using a reproducible workflow, explicit validation, and structured outputs for review-ready interpretation.
spatial-transcriptomics-mapper
Map spatial transcriptomics data from 10x Genomics Visium/Xenium onto.
ssgsea-immune-infiltration-analysis
Use when estimating immune infiltration from bulk RNA-seq expression matrices with ssGSEA/GSVA, comparing case versus control groups, and generating downstream…
statistical-analysis-advisor
Recommends appropriate statistical methods (T-test vs ANOVA, etc.) based.
string-database
Access the STRING database to map identifiers, retrieve protein–protein interaction networks, and run functional/PPI enrichment when you need interaction…
survival-curve-risk-table
Analyze data with `survival-curve-risk-table` using a reproducible workflow, explicit validation, and structured outputs for review-ready interpretation.
tf-target-gene-regulatory-network
Use when analyzing transcription factor (TF) regulatory networks using Dorothea database. Input gene list, identify regulating transcription factors, generate…
time-dependent-roc
Use when performing time-dependent ROC curve analysis for survival data with follow-up time, event status, and a numeric marker. Supports CSV/TXT/TSV/Excel…
tooluniverse-statistical-modeling
Statistical modeling and regression analysis for biomedical data. Linear/logistic/ordinal regression, Cox proportional hazards, mixed-effects models, ANOVA,…
toxicity-structure-alert
Analyze data with `toxicity-structure-alert` using a reproducible workflow, explicit validation, and structured outputs for review-ready interpretation.
umap-tsne-analysis
Use when performing sample-level dimensionality reduction and visualization on abundance or OTU-style matrices with a companion group file, generating UMAP…
uniprot-database
Direct REST API access to UniProt for protein search, entry retrieval, and identifier mapping; use when you need programmatic UniProtKB queries or…
univariate-multivariable-cox-regression
Use when running prognostic survival analysis on a clinical cohort with time-to-event data to estimate univariate and multivariable Cox proportional hazards…
upset-plot-converter
Convert complex Venn diagrams with more than 4 sets to clearer Upset.
uspto-database
Access USPTO data (Patent Search, PEDS, TSDR, assignments) when you need to query patents/trademarks and retrieve prosecution or status information…
variant-annotation
Query and annotate gene variants from ClinVar and dbSNP databases. \n\.
volcano-plot-labeler
Analyze data with `volcano-plot-labeler` using a reproducible workflow, explicit validation, and structured outputs for review-ready interpretation.
zinc-database
Access the ZINC (230M+ purchasable compounds) database when you need to look up compounds by ZINC ID/SMILES, run similarity/analog searches, or download 3D…
airbyte-sdk-reference
Reference documentation for the Airbyte per-connector typed SDK packages
airtable-cli
Lists bases, reads and writes records, manages tables and fields, filters and searches data in Airtable via the `airtable-mcp` CLI. Use when the task involves…
alphafold-database
Access AlphaFold's 200M+ AI-predicted protein structures. Retrieve structures by UniProt ID, download PDB/mmCIF files, analyze confidence metrics (pLDDT, PAE),…