estimate-immune-score-analysis
Use this skill to compute ESTIMATE immune-related microenvironment scores from a bulk expression matrix, generate an ESTIMATE score heatmap, and optionally…
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Updated 11-05 00:16
Data & analytics
17,418 results
experimental-data-analysis
Statistical analysis and reporting for experimental datasets; use when you need to interpret experimental results, test significance (t-tests/ANOVA), or…
facs-gating-viz-style
Use facs gating viz style for data analysis workflows that need structured execution, explicit assumptions, and clear output boundaries.
faers-multi-drug-soc-planner
Generates complete FAERS-based multi-drug single-SOC safety comparison research designs from a user-provided drug set, comparator, and adverse event domain.…
fastqc-report-interpreter
Use when analyzing FASTQC quality reports from sequencing data, identifying quality issues in NGS datasets, or troubleshooting sequencing problems. Interprets…
fda-database
Query the openFDA API to retrieve FDA regulatory datasets (drugs, devices, adverse events, recalls, submissions, UNII) when you need programmatic…
forest-plot-styler
Analyze data with `forest-plot-styler` using a reproducible workflow, explicit validation, and structured outputs for review-ready interpretation.
gene-database
Query the NCBI Gene database via E-utilities and the NCBI Datasets API; use it when you need to search genes by symbol/ID and retrieve annotations (RefSeq, GO,…
gene-info
Retrieves comprehensive gene information including PubMed publication counts, NCBI summaries, and Ensembl transcript data. Supports batch processing and file…
gene-protein-expression-matrix-normalization
Use when normalizing bulk gene or protein expression matrices with log2 transform, z-score standardization, or min-max scaling before downstream visualization…
gene-structure-mapper
Use gene structure mapper for data analysis workflows that need structured execution, explicit assumptions, and clear output boundaries.
geo-search-api
Search for gene expression DataSets and Profiles in the NCBI GEO database. Use this skill when the user wants to find microarray, RNA-seq, or other genomic…
gokegg-analysis
Use when performing GO and KEGG enrichment on a gene list from bulk RNA-seq or microarray studies, then generating a combined GO/KEGG dot chart. NOT for…
graph-interpretation
Use when interpreting scientific graphs and charts, explaining data visualizations for research presentations, writing figure captions for publications, or…
gsea
Run GSEA on a ranked gene list and produce the enrichment table, running-score table, and enrichment plots.
gsva-analysis-and-visualization
Use this skill to run GSVA or ssGSEA pathway-level differential analysis from a bulk expression matrix and a sample group file, then generate a heatmap from…
hipaa-compliance-auditor
Clinical-grade PII/PHI detection and de-identification for healthcare text data. Scans all 18 HIPAA identifier categories with confidence scoring, generates…
hmdb-database
Access the Human Metabolome Database (HMDB) to search metabolites by name/structure/ID and extract chemical/biological/clinical fields when you need…
immune-pathway-analysis
Run immune pathway GSVA or ssGSEA analysis from a bulk expression matrix, a sample group file, and a local immune Reactome gene-set table, then export…
kegg-database
Direct access to KEGG via the REST API for academic-only pathway/gene/compound/drug queries; use when you need precise HTTP-level control or targeted KEGG ID…
lab-budget-forecaster
Use lab budget forecaster for data analysis workflows that need structured execution, explicit assumptions, and clear output boundaries.
lightgbm-analysis
Use when training a LightGBM model on tabular data in R and returning model metrics, feature importance ranking tables, and feature importance plots.
lncrna-regulatory-network-construction-analysis
Use this bioinformatics data analysis skill to construct a database-driven lncRNA-mRNA regulatory network from target lncRNA and/or gene lists by projecting…
medical-vector-search
Vector database retrieval and evidence-based answering for medical research topics. Use when users need knowledge-base-backed answers about methodology,…