bio-metabolomics-statistical-analysis
Statistical analysis for metabolomics data. Covers univariate testing, multivariate methods (PCA, PLS-DA), and biomarker discovery. Use when identifying…
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Updated 11-05 00:16
Data & analytics
17,411 results
bio-metabolomics-xcms-preprocessing
XCMS3 workflow for LC-MS/MS metabolomics preprocessing. Covers peak detection, retention time alignment, correspondence (grouping), and gap filling. Use when…
bio-metagenomics-amr-detection
Profiles the antimicrobial-resistance gene content (resistome) of shotgun metagenomes - read-based quantification with RGI bwt, AMR++/MEGARes, ARGs-OAP/SARG,…
bio-multi-omics-data-harmonization
Harmonizes already-normalized per-omic matrices onto a common footing before joint integration - assembling a MultiAssayExperiment, choosing the per-omic…
bio-phylo-tree-visualization
Draw and export phylogenetic trees with Bio.Phylo plus matplotlib, and route rich figures to ggtree, ETE4, or iTOL. Covers why a tree figure is an argument not…
bio-population-genetics-linkage-disequilibrium
Calculate linkage disequilibrium statistics (r², D'), perform LD pruning for population structure analysis, identify haplotype blocks, and visualize LD…
bio-population-genetics-scikit-allel-analysis
Python population genetics with scikit-allel. Read VCF files, compute allele frequencies, calculate diversity statistics, perform PCA, and run selection scans…
bio-population-genetics-selection-statistics
Detect signatures of natural selection using Fst, Tajima's D, iHS, XP-EHH, and other selection statistics. Calculate population differentiation, test for…
bio-proteomics-data-import
Loads mass-spectrometry data into Python/R and strips the search engine's bookkeeping before any number is trusted -- removes decoys (REV__/Reverse),…
bio-proteomics-differential-abundance
Tests for differentially abundant proteins between conditions with limma/DEqMS empirical-Bayes moderation, proDA/msqrob2/MSstats missingness modeling, and…
bio-proteomics-protein-inference
Groups proteins from peptide identifications and controls protein-level FDR, framing inference as a chosen explanation (parsimony or a probability model) of…
bio-read-qc-umi-processing
Extract, process, and deduplicate reads using Unique Molecular Identifiers (UMIs) with umi_tools. Use when library prep includes UMIs and accurate molecule…
bio-rna-quantification-tximport-workflow
Import transcript-level quantifications from Salmon/kallisto/RSEM into R for gene-level analysis with DESeq2/edgeR using tximport or tximeta. Use when…
bio-spatial-transcriptomics-spatial-proteomics
Analyzes multiplexed antibody-imaging data (CODEX/PhenoCycler, MIBI-TOF, IMC, CyCIF, Opal/Vectra mIF) as continuous protein intensity rather than transcript…
bio-vcf-statistics
Generate variant statistics, sample concordance, and quality metrics using bcftools stats and gtcheck. Use when evaluating variant quality, comparing samples,…
build-inspector
Analyze the build system topology to identify independent build units, multi-artifact risks, and version drift hazards.
report-template
Synthesize all analyses from the Scout phase (build-inspector, runtime-inspector, git-forensics, concept-modeler) to generate a decision-ready system risk report.
accessibility-wcag-patterns
WCAG 2.1 AA compliance, ARIA attributes, keyboard navigation, screen reader optimization for accessible political data platforms
cia-data-integration
Citizen Intelligence Agency data model integration, riksdag data processing, political entity mapping
matlab-plot-skill
Use this skill when MATLAB figures look messy: cramped subplots, unreadable titles, awkward legends, bad page fit, or broken PDF output for LaTeX or Overleaf.…
hithink-finance-data
Used by the Agent to manage the local DuckDB through the hithink-finance CLI: initialize, sync, status, validate, migrate, repair, clean, delete, read-only SQL, export; remote real-time data is routed to the corresponding business skill.
hithink-finance-financials
Used by Agent to query A-share income statements, balance sheets, cash flow statements, financial indicators, and annual/quarterly report windows through the hithink-finance CLI; price quotes are transferred to hithink-finance-market, and index financials are outside the scope of this skill.
hithink-finance-index
Used by agents to query the Hithink index/concept/industry/region/featured index catalog, index constituent stocks, index snapshots, and index history via the hithink-finance CLI; for individual stock quotes switch to hithink-finance-market, and for stock code search switch to hithink-finance-symbol.
hithink-finance-options
Query option varieties, contract details, intraday and daily K via the hithink-finance CLI.