building-automl-pipelines
Build automated machine learning pipelines with feature engineering, model selection, and hyperparameter tuning. Use when automating ML workflows from data…
Skills
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Updated 10-28 00:17
Data & analytics
17,076 results
creating-data-visualizations
Generate plots, charts, and graphs from data with automatic visualization type selection. Use when requesting "visualization", "plot", "chart", or "graph".…
data-augmentation-pipeline
Process data augmentation pipeline operations. Auto-activating skill for ML Training. Triggers on: data augmentation pipeline, data augmentation pipeline Part…
designing-database-schemas
Process use when you need to work with database schema design. This skill provides schema design and migrations with comprehensive guidance and…
detecting-data-anomalies
Process identify anomalies and outliers in datasets using machine learning algorithms. Use when analyzing data for unusual patterns, outliers, or unexpected…
dynamodb-table-design
Designs a DynamoDB single-table structure from a documented set of access patterns. Use when the user has an access patterns .md file (from…
13c-metabolic-flux
Estimates intracellular metabolic fluxes from steady-state carbon-13 isotope-tracing measurements using validated atom maps, mfapy isotope simulation,…
anndata
Data structure for annotated matrices in single-cell analysis. Use when working with .h5ad files or integrating with the scverse ecosystem. This is the data…
arboreto
Infer gene regulatory networks (GRNs) from gene expression data using scalable algorithms (GRNBoost2, GENIE3). Use when analyzing transcriptomics data (bulk…
bids
Organizes, queries, validates, and converts neuroscience and biomedical datasets using the Brain Imaging Data Structure (BIDS) standard, covering MRI, PET,…
biopython
Provides Biopython (Bio.Seq, Bio.SeqIO, Bio.Align, Bio.Entrez, Bio.Blast, Bio.PDB, Bio.Phylo, Bio.motifs, Bio.SeqUtils, Bio.Restriction) for sequence handling,…
clinical-decision-support
Prepare and validate research-only clinical decision-support evaluation, evidence-profile, cohort, survival, biomarker/model, privacy, and governance…
cobrapy
Runs constraint-based metabolic modeling with COBRApy (Python, import cobra) on genome-scale models in SBML, JSON, YAML, or MATLAB format. Covers FBA, pFBA,…
etetoolkit
Analyze, manipulate, compare, annotate, and visualize phylogenetic or other hierarchical trees with ETE 4. Use for Newick/Nexus tree I/O, topology edits and…
flowio
Read, inspect, and write Flow Cytometry Standard (FCS) 2.0, 3.0, and 3.1 files with FlowIO. Use for low-level FCS metadata and channel inspection, NumPy event…
geniml
Plans and audits local genomic-interval machine learning workflows with Geniml (0.8.4) and Gtars: validates BED files against chromosome sizes and assembly…
genomic-intelligence
Predict regulatory features, gene structure, and expression directly from DNA sequence using Genomic Intelligence's hosted transformer DNA language models — no…
gtars
Inspects and plans work with Gtars, the Rust/Python/CLI toolkit for genomic intervals: BED RegionSet set algebra (reduce, setdiff, intersect, closest, cluster,…
matchms
Process, clean, compare, and search tandem mass spectra with matchms. Use for MS/MS file I/O, metadata harmonization, peak filtering, spectral similarity,…
molecular-dynamics
Runs and analyzes molecular dynamics simulations using OpenMM and MDAnalysis. Covers system preparation with PDBFixer and OpenFF/GAFF2, force field choice…
neurokit2
Use NeuroKit2 to build or audit reproducible research workflows for physiological time-series preprocessing, event/interval analysis, multimodal alignment,…
neuropixels-analysis
Analyze Neuropixels extracellular recordings end-to-end with SpikeInterface. Covers loading SpikeGLX/Open Ephys/NWB data, preprocessing, drift/motion…
nextflow
Build, run, and debug Nextflow data pipelines and nf-core workflows end to end. Use whenever the user mentions Nextflow, nf-core, .nf files, nextflow.config,…
pathml
Covers local, research-only computational pathology with PathML 3.0.5: loading and tiling whole-slide images (OpenSlide, Bio-Formats), preprocessing and QC…