anndata
This skill should be used when working with annotated data matrices in Python, particularly for single-cell genomics analysis, managing experimental…
Skills
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Updated 10-25 00:14
Data & analytics
16,930 results
bioservices
Primary Python tool for 40+ bioinformatics services. Preferred for multi-database workflows: UniProt, KEGG, ChEMBL, PubChem, Reactome, QuickGO. Unified API for…
cellxgene-census
Query CZ CELLxGENE Census (61M+ cells). Filter by cell type/tissue/disease, retrieve expression data, integrate with scanpy/PyTorch, for population-scale…
chembl-database
Query ChEMBL's bioactive molecules and drug discovery data. Search compounds by structure/properties, retrieve bioactivity data (IC50, Ki), find inhibitors,…
clinicaltrials-database
Query ClinicalTrials.gov via API v2. Search trials by condition, drug, location, status, or phase. Retrieve trial details by NCT ID, export data, for clinical…
clinvar-database
Query NCBI ClinVar for variant clinical significance. Search by gene/position, interpret pathogenicity classifications, access via E-utilities API or FTP,…
deepchem
Molecular machine learning toolkit. Property prediction (ADMET, toxicity), GNNs (GCN, MPNN), MoleculeNet benchmarks, pretrained models, featurization, for drug…
drugbank-database
Access and analyze comprehensive drug information from the DrugBank database including drug properties, interactions, targets, pathways, chemical structures,…
geniml
This skill should be used when working with genomic interval data (BED files) for machine learning tasks. Use for training region embeddings (Region2Vec,…
mlflow
Track ML experiments, manage model registry with versioning, deploy models to production, and reproduce experiments with MLflow - framework-agnostic ML…
networkx
Comprehensive toolkit for creating, analyzing, and visualizing complex networks and graphs in Python. Use when working with network/graph data structures,…
pinecone
Managed vector database for production AI applications. Fully managed, auto-scaling, with hybrid search (dense + sparse), metadata filtering, and namespaces.…
uniprot-database
Direct REST API access to UniProt. Protein searches, FASTA retrieval, ID mapping, Swiss-Prot/TrEMBL. For Python workflows with multiple databases, prefer…
vaex
Use this skill for processing and analyzing large tabular datasets (billions of rows) that exceed available RAM. Vaex excels at out-of-core DataFrame…
adding-analytics
Add PostHog analytics to a web application, including event tracking, page views, feature flags, and session replay.
database-optimizer
Expert database optimizer specializing in modern performance tuning, query optimization, and scalable architectures. Masters advanced indexing, N+1 resolution,…
how-to-do-offline-recommendations-with-sqlite-and-gemini
Learn how to enhance your CMS like PocketBase with AI-powered content recommendations using text embeddings, SQLite, and k-nearest neighbor search for…
syncfusion-winui-linear-gauge
Implements Syncfusion WinUI Linear Gauge (SfLinearGauge) control for data visualization in desktop applications. Use this when building progress indicators,…
syncfusion-winui-pyramid-chart
Implement Syncfusion WinUI Pyramid Charts (SfPyramidChart) for visualizing hierarchical proportional data. Use this when working with pyramid charts,…
vectordb
Vector database operations for embeddings and semantic search. Activate for Pinecone, Weaviate, Chroma, pgvector, RAG, and similarity search.
cobrapy
Constraints-Based Reconstruction and Analysis for Python. Used for modeling large-scale metabolic networks in microorganisms.
photutils
An Astropy coordinated package for detecting and performing photometry of astronomical sources. Provides tools for background estimation, source detection…
glmocr-table
Official skill for recognizing and extracting tables from images and PDFs into Markdown format using ZhiPu GLM-OCR API. Supports complex tables, merged cells,…
scrape-plan
Plan a web scrape and author a validated extraction spec — explore a detail page, discover fields, confirm the schema, then validate it with more pages,…