alterlab-dask
Scales pandas/NumPy workflows beyond memory with Dask distributed computing — parallel DataFrames, arrays, delayed task graphs, and cluster execution. Use when…
Skills
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Updated 10-22 00:14
Data & analytics
16,784 results
alterlab-datacommons
Query Google Data Commons for public statistical data aggregated from global sources, resolving geographic entities and pulling time-series statistics. Use…
alterlab-datamol
Wraps RDKit in a high-level, pandas-friendly datamol interface with sensible defaults for everyday drug discovery — SMILES/SDF loading into DataFrames,…
alterlab-deepchem
Runs molecular machine learning with DeepChem — diverse featurizers, pre-built MoleculeNet benchmark datasets, and pre-trained models (ChemBERTa, GROVER) for…
alterlab-drugbank
Access and analyze drug information from the DrugBank database — drug properties, interactions, targets, pathways, chemical structures, and pharmacology data.…
alterlab-ena
Access the European Nucleotide Archive (ENA) via its API and FTP to retrieve DNA/RNA sequences, raw sequencing reads (FASTQ), and genome assemblies by…
alterlab-fda
Query the openFDA API for drugs, medical devices, adverse event reports, recalls, regulatory submissions (510k, PMA), and substance identification (UNII). Use…
alterlab-flowio
Parse and write FCS (Flow Cytometry Standard) files v2.0-3.1 with FlowIO — extract event data as NumPy arrays, read $-keyword metadata and channel/parameter…
alterlab-gene-db
Query NCBI Gene via the E-utilities and Datasets APIs, searching by gene symbol or Gene ID and retrieving gene information (RefSeqs, GO terms, genomic…
alterlab-geomaster
Covers geospatial science across remote sensing, GIS, spatial analysis, and machine learning for earth observation — satellite imagery processing (Sentinel,…
alterlab-imaging-data-commons
Query and download public cancer imaging data from the NCI Imaging Data Commons (IDC) using the idc-index Python package, filtering by metadata, visualizing…
alterlab-lamindb
Manage, annotate, and trace biological data with LaminDB, an open-source FAIR data framework that makes datasets queryable, versioned, and reproducible. Use…
alterlab-molfeat
Featurizes molecules for machine learning with molfeat — ECFP/MACCS/MAP4 fingerprints, RDKit and Mordred physicochemical descriptors, pharmacophore and shape…
alterlab-networkx
Creates, analyzes, and visualizes complex networks and graphs in Python with NetworkX. Use when working with network/graph data structures, analyzing…
alterlab-pymc
Bayesian modeling and probabilistic programming with PyMC 6 and ArviZ 1.x — hierarchical models, MCMC (NUTS via PyMC, nutpie, NumPyro, or BlackJAX),…
alterlab-scanpy
Run the standard single-cell RNA-seq analysis pipeline with Scanpy on AnnData — QC filtering, normalization, dimensionality reduction (PCA, UMAP, t-SNE),…
alterlab-scvelo
Run RNA velocity analysis with scVelo on single-cell RNA-seq data — estimate cell-state transitions from spliced/unspliced mRNA dynamics, infer trajectory…
alterlab-umap
Nonlinear dimensionality reduction with UMAP — fast manifold learning for 2D/3D visualization, clustering preprocessing (e.g., HDBSCAN), and supervised or…
alterlab-uniprot
Provide direct REST API access to UniProt (Swiss-Prot/TrEMBL) for protein sequence searches, FASTA retrieval, functional annotations (GO terms, domains), and…
alterlab-usfiscaldata
Queries the U.S. Treasury Fiscal Data API across 50+ datasets and roughly 180 data tables (no API key required) for federal financial data on national debt,…
alterlab-uspto
Access USPTO patent and trademark data through the Open Data Portal (ODP) APIs — Patent File Wrapper search, examination history (the PEDS successor),…
alterlab-zinc-db
Access the ZINC database of 230M+ commercially available (purchasable) compounds, searching by ZINC ID or SMILES, running similarity searches, and downloading…
antv-gpt-vis
Recommend and generate appropriate data visualization charts using the GPT-Vis library. Supports two output modes — (1) Syntax mode, which generates Syntax or…
ts-sdk-view-and-query
How to read on-chain data in @aptos-labs/ts-sdk: view(), getBalance(), getAccountInfo(), getAccountResources(), getAccountModules(), getResource(). Triggers…