dnanexus-integration
DNAnexus cloud genomics platform. Build apps/applets, manage data (upload/download), dxpy Python SDK, run workflows, FASTQ/BAM/VCF, for genomics pipeline…
Skills
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Updated 11-05 00:16
Coding & development
39,551 results
fluidsim
Framework for computational fluid dynamics simulations using Python. Use when running fluid dynamics simulations including Navier-Stokes equations (2D/3D),…
gtars
High-performance toolkit for genomic interval analysis in Rust with Python bindings. Use when working with genomic regions, BED files, coverage tracks, overlap…
labarchive-integration
Electronic lab notebook API integration. Access notebooks, manage entries/attachments, backup notebooks, integrate with Protocols.io/Jupyter/REDCap, for…
modal
Cloud computing platform for running Python on GPUs and serverless infrastructure. Use when deploying AI/ML models, running GPU-accelerated workloads, serving…
opentrons-integration
Official Opentrons Protocol API for OT-2 and Flex robots. Use when writing protocols specifically for Opentrons hardware with full access to Protocol API v2…
pydeseq2
Differential gene expression analysis (Python DESeq2). Identify DE genes from bulk RNA-seq counts, Wald tests, FDR correction, volcano/MA plots, for RNA-seq…
pydicom
Python library for working with DICOM (Digital Imaging and Communications in Medicine) files. Use this skill when reading, writing, or modifying medical…
pyzotero
Interact with Zotero reference management libraries using the pyzotero Python client. Retrieve, create, update, and delete items, collections, tags, and…
rowan
Rowan is a cloud-native molecular modeling and medicinal-chemistry workflow platform with a Python API. Use for pKa and macropKa prediction, conformer and…
scikit-survival
Comprehensive toolkit for survival analysis and time-to-event modeling in Python using scikit-survival. Use this skill when working with censored survival…
stable-baselines3
Production-ready reinforcement learning algorithms (PPO, SAC, DQN, TD3, DDPG, A2C) with scikit-learn-like API. Use for standard RL experiments, quick…
statsmodels
Statistical models library for Python. Use when you need specific model classes (OLS, GLM, mixed models, ARIMA) with detailed diagnostics, residuals, and…
sympy
Use this skill when working with symbolic mathematics in Python. This skill should be used for symbolic computation tasks including solving equations…
zarr-python
Chunked N-D arrays for cloud storage. Compressed arrays, parallel I/O, S3/GCS integration, NumPy/Dask/Xarray compatible, for large-scale scientific computing…
ci-loop
Drive an open PR's failing CI to green: read the log, reproduce, fix in scope, push, up to 3 attempts under one approval. Reviewer comments are /pr-feedback;…
write-discoverable-code
Rules for writing code that coding agents (and humans) can find and understand through plain-text search. Apply whenever writing or renaming code: functions, types, constants, files, error messages, doc comments. Grounded in measurement: agents navigate by plain-text search, not by AST or language server, so every identifier is a search query and every search miss costs wasted reads.
turborepo-architecture
Enforce portable Turborepo + workspace monorepo house style: apps/packages layout, catalog pins, turbo.jsonc transit/cache rules, package scopes and exports,…
rlm-workflow
Orchestrates the RLM repo workflow end-to-end with phase gates, locked artifacts, addenda, traceability, and automatic bootstrap/upsert of AGENTS/PLANS…
fix-hard
[Implementation] Use subagents to plan and fix hard issues
fix-issue
[Implementation] Use when you need to debug and fix GitHub issues with systematic investigation.
plan-two
[Planning] Research & create an implementation plan with 2 approaches
accessibility-expert
WCAG 2.1/2.2 compliance, WAI-ARIA implementation, screen reader optimization, keyboard navigation, and accessibility testing expert. Use PROACTIVELY for…
mcu-embedded-review
Reviews embedded Rust firmware for RP2350 (Raspberry Pi Pico 2 W) and ESP32-S3 (Heltec) microcontrollers with focus on Embassy async runtime, memory…