alterlab-dnanexus
Develops and runs genomics pipelines on the DNAnexus cloud platform using the dxpy Python SDK and dx CLI — build apps/applets, write dxapp.json,…
Skills
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Updated 10-29 00:09
Coding & development
38,593 results
alterlab-interpro
Query the EMBL-EBI InterPro REST API for protein family, domain, and functional-site annotations integrated from member databases (Pfam, PANTHER, PRINTS,…
alterlab-metabolomics-wb
Access the NIH Metabolomics Workbench via its REST API (4,500+ public studies), querying metabolites, RefMet standardized nomenclature, MS/NMR data, m/z mass…
alterlab-pysam
Read and write genomic alignment and variant files in Python with pysam (htslib bindings) — SAM/BAM/CRAM alignments, VCF/BCF variants, and FASTA/FASTQ…
alterlab-string-db
Query the STRING API for protein-protein interactions (59M proteins, 20B+ interactions across 12,500+ organisms), building interaction networks, discovering…
alterlab-timesfm
Forecasts time series zero-shot with Google's TimesFM foundation models — TimesFM 2.5 (200M, Apache-2.0 weights; ForecastConfig API, XReg covariates) and…
cicd-automation
Set up GitHub Actions workflows for CI/CD with automated testing, linting, and deployment for Python/UV projects. Use when creating CI pipelines, automating…
plaid-integration
This skill should be used when the user asks to "integrate Plaid", "connect a bank account", "sync bank transactions", "add Plaid Link to my app", or…
architecting-solutions
Architecting solutions at the team level while staying coherent with Bitwarden's holistic architecture. Covers security mindset, architectural judgment,…
snowflake-development
This skill should be used when the user asks to "optimize Snowflake queries", "analyze Snowflake SQL performance", "size Snowflake warehouses", "review…
issue-discover
Unified issue discovery and creation. Create issues from GitHub/text, discover issues via multi-perspective analysis, or prompt-driven iterative exploration.…
team-issue
Unified team skill for issue resolution. Uses team-worker agent architecture with role directories for domain logic. Coordinator orchestrates pipeline, workers…
bevy-rendering
Use when choosing Bevy 0.19's built-in renderer versus an API-only, headless, or external renderer; selecting forward or deferred PBR; migrating `RenderGraph`…
mapstruct
MapStruct Java mapping framework. Covers basic mappers, update mappings, nested objects, collections, custom methods, and Lombok integration. Based on…
spacetimedb-clients
Use when working with general SpacetimeDB client SDK concepts: generated bindings, connection lifecycle, identity, local cache, subscriptions, subscription…
pressreleasesonline
Draft and publish AI-powered press releases — submit a URL + notes, get a live release page instantly. Free, no API key required.
typescript-expert
TypeScript expert. Use for typing, generics, decorators, design patterns, and best practices in TypeScript.
designing-apis
Design clean, consistent APIs. Use when creating new endpoints, defining contracts, or improving API ergonomics. Covers REST, versioning, and error handling.
refactoring-code
Improve code structure without changing behavior. Use when code is hard to read, modify, or test. Covers Extract Method, Rename, and other safe refactorings.
implement-spec-with-goal
Implement a spec using the harness's goal feature.
linejs
Helps a coding agent build LINE bots / clients with the `@evex/linejs` library — JSR package, Deno-first, runs on Node/Bun too. Use when the user asks to write…
fastify
Provides comprehensive guidance for Fastify framework including routing, plugins, schemas, hooks, and performance optimization. Use when the user asks about…
speckit-implement
Execute the implementation plan by processing and executing all tasks defined in tasks.md. Applicable to scenarios that require executing this step according to the Spec Kit workflow (based on the official GitHub Spec Kit template).
speckit-initial
Run `specify init` in the current or target directory to bootstrap a Spec Kit project (pull .specify/ and slash commands); supports multiple AI agents and…